Basic Information | |
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Taxon OID | 3300025132 Open in IMG/M |
Scaffold ID | Ga0209232_1020859 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2576 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010910 | Metagenome / Metatranscriptome | 297 | Y |
F012114 | Metagenome | 283 | Y |
F018906 | Metagenome | 232 | Y |
F019646 | Metagenome | 228 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209232_10208591 | F019646 | AGG | MSNVNQNFEICYTSDCCGAYVHSDAEICPTCLEHCEVIEDCTVYDDSDAGHFDSMLDFHGAG |
Ga0209232_10208593 | F012114 | AGGA | MSYNNCIMPEVRKNVWVVYDLEGNKIGEVGAMSEAEARQLVQHHVLIPFRLSHIEE |
Ga0209232_10208594 | F018906 | AGGAG | LKTCKVNPLKLNETRFEAAAHEGGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILKYPLGTDPEITSEIIYDQPINEYLGCVDVIGWRDFFEVADILQQIRNYNTGEYAYNE |
Ga0209232_10208598 | F010910 | GGAG | MLTIYTIFGMMVGFEGYDNGKVYFGVYTPNCEYGYVI |
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