Scaffold Ga0209232_1012562

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1012562
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3460
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F023748	Metagenome	209	Y
F055714	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10125621	F023748	AGGAGG	MSKEYKYTYRFSEQSVDTRYYKVESNTKLTKSEMQDIAWSVEMTEGEHFEDESGSMATFEGTEYGDDAQYQMEEGEEDLADD
Ga0209232_101256210	F021207	GGAGG	MSKRFKQVNIQQFAILVQEVDISQYTQEEYVDIIEEIYMGIFRHTTDGDFVIPTMPNEEGNWKLHKPSATKEEVMELIKKGKVIWDKSVS
Ga0209232_101256213	F055714	AGG	MSKWTSTSIIINSACEEMVKSALKDGWNFEVLTEGEHLCENSTDFDEIMENIHAVDGVLEIHIHKEGEKSDWCNVILHNGDPDCEISDCTVDGYIDKWTERTEFGQKPWNDGFK
Ga0209232_10125622	F008925	AGGAG	MTTKSKPTIDAVTLNLINKLKQIDDTMNEGAWEYIHLGDILRLQDAFHKAIRHYDLKKEGGVHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE
Ga0209232_10125627	F013187	AGGAG	MPTKAKIKKKPTWGWIYGDECPELWEHFGFPYPDPDDRMKLKFVKYESKEMQSG