Scaffold Ga0209232_1003125

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1003125
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7900
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F032993	Metagenome / Metatranscriptome	178	Y
F067202	Metagenome	126	Y
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100312510	F087896	AGGAG	MNYKTSQGVELSEDGYTKVVKQVNLGYGWEATLYNNDRLVLTQDATGDTLSIPPESTKTLRDIITSITEEK
Ga0209232_100312511	F020815	GAGG	MRLYMNKQGEWVGTQAEAKKIKADMVDVPTDKPNLLKWLNTFTGKIDLAEIPPLDAAKQDPGTVARKPHKYDFWDNIRDVAENCSLTDFNVALAVFMDRVHDIADKQKETQQ
Ga0209232_100312512	F028349	GAGG	MQVRTYHKNGKAVQFLGYSDIDASNAAKVVMGEIGDVGYFKPRLGTDEDIYDWVYVKETTDEDLQRVLGK
Ga0209232_100312513	F067202	AGGAG	MQYKDIVIAAEDLECHTIDTVADAIHEHIIDLGLATSKTLTGFTWRIDVRMRTDDAS
Ga0209232_10031256	F032993	GGAG	MKTKKIIGSLPNMEIPQLPVSLLSHMEAMGLLPKSHEDDGVDNIDVPWRSETNYFRRDVLDKNNEPLF