Scaffold Ga0209232_1002040

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1002040
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10361
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (32.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F067212	Metagenome	126	Y
F068236	Metagenome / Metatranscriptome	125	Y
F091012	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100204013	F091012	N/A	MENLWQRLKPAVKKQILAEKELYPYLVNEVKVKLENNNFWNDLPIATARQVINFTHDSVYDISMNDFMWGDKFIKKA
Ga0209232_100204019	F045198	N/A	MKLEAEHIEQIASYMADSLEDHLDIVFWDGIARVLDEFNIDYEDIGDISDEDCEAIVRETRILFSPKND
Ga0209232_100204027	F068236	AGGA	MLETNAKKFTHNQVIEVGGEYLKCKETGQWVSEKDVENYEIEILNIQIEQYYEQEQDKYY
Ga0209232_100204028	F045797	N/A	MRILKTVKEDSCIYLLEDFAGTTISTKWRPYTVGDLPKNFGCNQYETEVEGINEWFNYKGYTYVRDER
Ga0209232_100204033	F067212	N/A	MQLHCKLCGKDVTMETEFETRPPYRIINNHSCEAKRAKQEAKAKALESGFLL