NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1001647

Scaffold Ga0209232_1001647


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1001647 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11802
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.03%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F009959Metagenome / Metatranscriptome310Y
F027242Metagenome / Metatranscriptome195Y
F050305Metagenome145Y
F053219Metagenome / Metatranscriptome141Y
F073567Metagenome / Metatranscriptome120Y
F077194Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_100164712F050305N/AMNNLNTTIDKVAMSEFNMHYYQLDDNEKQWCHDEMVNNPKWLKKDWEDPMWTMGAKWEAGLPIYKTYK
Ga0209232_100164713F001740N/AMSYNPNNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYPGEANGVFMTLSKSQQDDVYELLNEIL
Ga0209232_100164714F077194N/AMKQTLTVLEFSTGEVHQYHDVNYEKYEMELDEFISVQLGYNLNEVEYMFHDDSTVYNLTHEI
Ga0209232_100164718F009959N/AMTEDEVIDKVCDRIVNTMYNELDYYMFEELGYTETDDKYVEDAELLINKIINRLIK
Ga0209232_100164725F027242N/AMKDTNAIEEALKDKCKKEIEGVVNVFMNELEVKIRGEYNGANYYDFIGPNNGGKRSFHVMGTEQLKNVLLRMISNAHLDSMVAVKSKELIKKLELV
Ga0209232_100164728F053219N/AMKYAIFDMDDTLCTLKHRRDKAMESGKMNFNILFDSKLVEHDLPQGHVVELAEILRMFNTRIIIMTARPYYMEQATKQWLKDHRIPYFKLITKEKNKVFQKSSLWKESKLQELLQDINIEQIVLSIDDNKDNQAMFESYGIPVFDPLLQ
Ga0209232_10016478F073567N/AMINLTKKQTKEITSLYEMLQAGWHYTNHPMHYKFMQAHNDLPDYKS

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