Scaffold Ga0209232_1000920

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1000920
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16771
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (65.71%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005038	Metagenome / Metatranscriptome	414	Y
F005431	Metagenome / Metatranscriptome	401	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F013234	Metagenome	273	N
F046315	Metagenome	151	Y
F053631	Metagenome	141	Y
F058519	Metagenome	135	N
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100092013	F005431	AGGA	MMDFDDDKKGYSAVVYIMESSNSVVVHFGGFNDLRECRYFSSHIMEDFGIEQLLNVPQGVTVH
Ga0209232_100092014	F013234	N/A	MANIKYNKTIEKTILNRLCNGESIRKICKDPEMVSWATFSQKLKDSEKLQDQYYTCKKIGIEMVIAEAQDKLMDSINTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKSDTKLTLNGGDKPIEIKWQQ
Ga0209232_100092017	F053631	AGAAGG	MIKSIYFALCFGLALFGLLVVTHISIPIGLSMFFIFIIKFLLMLPKYQEE
Ga0209232_100092020	F005038	AGGAGG	MKNKDIDIYNLFSATYKKRKMFSFIGFGELLLMPKVDKPIRQISNIYHFPIKQYYNQKRRVK
Ga0209232_100092025	F004629	AGGA	MIPTRLTVDQLDNYFQTATYVERYMPSPLNIKNKRTEMFTLIERLYGIGKDKDSYKGEDKPKMKIRLNGEQLQIYEFCLLLLLKAQEKDRDIIQLRNFPHKRSFRQLKRFFMPVSHEQVRIKYYNALYELLKLYHLKGRKYFLK
Ga0209232_100092026	F011253	N/A	LAGGVPKLKDRSIDIQNIIKKIVKSKSFPYSNAVNKIKKDRKGYYQQKDIKNKQKTLSTDRFQQYLKDIQEHDTD
Ga0209232_100092027	F001839	GAG	MDKIKYFEKIDKDLINNRALNSHEKLIYVICKSFENAPRGCRISHKYLMLRTGIKTVPTLVRCLDRLTMFGCLARKQIDNGTCHYVFDKPTMQEYIQHNLNKRKKISLSKNRHNRNLNTALSSPNVINIGKVIK
Ga0209232_100092029	F004990	GGA	MYGDPKKKCCSCEKGADIKEGSKYYCCDHYALYVLGKPMSQIEKELQKEIK
Ga0209232_100092030	F008915	GAG	MNNEVMLDLYEMQSAAHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGSFGEAAVAKFLKIKFTFTCNHGSDADLIFKDLHLQIRTQLPKSNNKNSLIIRPKAKPNELYILVVDEAPIFKILGFVNSTYVLGQEKWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN
Ga0209232_100092031	F059875	N/A	MKILVLIFGVITNDGKIELIKVPSIELKNVSSCEKAIETIAKWQLNPKSKPGNYEVWGFYTYKNRPIMLQYCTESGVEHE
Ga0209232_100092032	F046315	N/A	MNNILNKKLLEYSIKSGYNSSFIKEYMKRNNLLPKEYSFRKASLDLILKKYNKKIIDFVKDTYTPKEQKNKLAQISKILNPKKDAPHYYTINDLAYDLSTWVNNFNTSNVSISPQFFMGENVQIDCIGELFGNGQIGLHKPKDFHKINIHPKYVSFKAIECQTEHKRGLMMLFEPTKIIDRNANNRTAICQDKKTKVIWFGFIDPQSNGKYNILDKSQSTGKTIGKLAENIELSWSAEIKAAYYPNIYHT
Ga0209232_100092033	F058519	N/A	MANHLKIIGEAYEKFNDTNTSVSANKEPHSLRAMKRYFLTKEQSNKCNNASLKAGTIGHNIVEKCLNKNLTVDEVFASDEIQKEIDAYFPIDKTDEMKFKFAIKFLPQTANNHLENFKELPKQTWKTEVEFIKWIEPVKIPFRMFCDVVGLESVVDIKNKLPGVKFAPLKTKQTKENPNRIGDWTCSHPKLDSRVFTSDLMQISLYAHTTGLKPSLSYASANERILFTEDNCEELKPENLKLWLNELIAYEIAWEKKLKAADGSVTELLWLNIPDFSDIRKKSFWWNSIPKEYMENYLKTYV
Ga0209232_100092034	F006892	N/A	MSDMGIIKPLRDRVRDLEVINEAHQKKNGQLRVEIQDKDKLIKILKEKINNPTKKMREQGQL