Scaffold Ga0209128_1021166

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1021166
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2826
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070003	Metagenome	123	Y
F078584	Metagenome	116	Y
F090993	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_10211661	F090993	N/A	GVIVKAGDLVQVLPAKIGYYIVTGRAKMEDDYVGRTVYWHLHPLPSANFHYGGPMDEKYIEVASEGR
Ga0209128_102116611	F070003	GGA	MKVGDLVKFRRHNNSPHGIVLEIANLPESPHPSQPERSAAYVEWACKYTAAGNYQISILEVVNEN
Ga0209128_10211664	F078584	GAG	MKAGDIVIATEDTYTFDKGDVGLLVDIDRGQLDKDYRPFYYVQWNSCPNADPYRRDVNGKHIEVLYSS