NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209128_1014567

Scaffold Ga0209128_1014567


Overview

Basic Information
Taxon OID3300025131 Open in IMG/M
Scaffold IDGa0209128_1014567 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3683
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008138Metagenome338Y
F008252Metagenome336Y
F062179Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209128_10145672F008138N/ALTVKPESNFGRQIMKNLPFAQWTRIENRHGGGIPDLYGICDGVAIWLELKCIKQNSINISPLQISWNYNNFRHGGKNYYIVQDARSRVIKLYDGDKGRELKRDGFRVPCIVELSPPYDWQGLGDQLFDENSILHDGDINGLRQVEL
Ga0209128_10145675F062179AGGAGGMPDLRIKTAIDNGDLPKDHGHSFKDITLEQATNPTVIKAYYEQFKKEFGRPSIFASPIKKGSRSQS
Ga0209128_10145676F008252AGGAMSKTIVNPNPFGKSGKYNGLWFFYDDDISIYWNRSHTFNVWNNGKEVNCFTVMESMTPKQAEENADEWLADVLEEEKLRHADAF

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