Scaffold Ga0209128_1009790

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1009790
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4865
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y
F016324	Metagenome	248	Y
F037424	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_10097902	F014672	AGGA	MREFKPGDLVRIKDGTHQDGMPDHRVGMIVELGETSKSYTKAYTVVFLGTDVHLKFHEMFLEHFTSS
Ga0209128_10097905	F012507	AGGAGG	LSRMWTDKLKVGDLLYDLDGKPAIVLDKEETARSRYGDVANKRLRFKLHIEGDQGWLDEVRLRMQYKLPLHFLNTKNLD
Ga0209128_10097906	F016324	N/A	MIGDIVKLSGPGGMGRQYARVHGVGIVTQIHKPEHARKLYEVKWLKSEERMRFHEEDLIIVSDVDRQVEGG
Ga0209128_10097908	F037424	AGGAG	MSWSGTVTCSHCYRQGHNKRKCPKLTQDYLDKYARYVRIARDTEDQDTADRYMREADRFRKQYMKRTKIDPATGEKVTNKTAKAERMKNVTCGYCCETGHTRRVCETVKRDKLVFVEESRRARAAAFEGAVNMGIGVGSMIPIRTTGYHGPDNEWSTYTSLRYVKSVDWSAVTAQRPTMWIYHVEAGKLASANQSRWTSRDKVAKMLENFEDARGYAAAEGQKAPAASLIPTLDPPAGWLDCDPSTIDVAGHFPTKGGKYEKQRQHTYAWPSGETAQVIRDLGLEEHWKGRL