Scaffold Ga0208919

Basic Information
Taxon OID	3300025128 Open in IMG/M
Scaffold ID	Ga0208919_1002148 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025128 Open in IMG/M

Scaffold ID

Ga0208919_1002148 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10572
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (46.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10572

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (46.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)	Depth (m)	90
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-13.003

Long. (^o)

-80.809

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F065664	Metagenome / Metatranscriptome	127	N
F085538	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10021481	F065664	N/A	VRILHLFSMAGVAEIMCEYGAGDKVLQLEQFDTMGFYEYYGVTETFKDLQSLVKRAEDIQTSYDKIVIHDYSEFKLNFPKNKVVLIFHGSKLRSMEQTEIESVKEYPCFVTTSDLLDILPFATHLPAPVDRELFKKDVEGYGWIAINRSYQRDFVEKRIKDRYPDIEYYERNPGSIIRYEDMPDFLSQYKHYVDWKFTTDAEPVSLPDPSCTGIQALALGLTVHDKDGGTLSPHLLLIHDAKRVVQRFVDEIT
Ga0208919_100214812	F085538	N/A	MTMLTTDSRQTFGIGIDLSTQNLHYQSLTSDHTFKVGVGINYFDDTKGLIKILTNDTVYDYITKFYVIDGLYAGRNDTQKSDPTYLKDLKEIYSKIHIVDMNNKTQIQKRNKYWELAKKDKMDYMIVCDSDEYMDIKPDILDNSLRTIQDRPEKCYPIKQHMVGITTMSRPRLFKGPFTFRHLQSEKENTISHGSLYDKDDTEIINQMYAWFKDHPKREINSDNQSGIDGIEMWHNKEFRTKERIIADRVYYDNTPNR
Ga0208919_10021483	F019751	AGCAG	MFFGRNAYQIADQINKDTQLMSKYGKTTASGVHYHIKQIQQEMENSISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKAKGFDNMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPEVEDNGVSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208919_1002148

Overview

Ecosystem & Geography

Associated Families

Sequences