Scaffold Ga0208919_1000083

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1000083
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64055
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (43.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083233	Metagenome	113	Y
F099846	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100008329	F099846	N/A	VASSETDYHRGHTKLSTYLGLRSIDELVNYTYNRTPDEILKAGFSTTDPGAGGNYNPLFGAMAWANFNMEANIFAALPKYVWDFSGFRIFSAKASNLPTVNDKVHGYGGTVEGGQISAAVKPTVKEVTVKPKTLQYVFEASELLEQLVDNSRDDNYGSLAQQRVYASDQFKERVNLMLTDIPVDTVQTDKNQKLNLESLDRIVASGAEYTFEAHSNVADLYDPWRSANGNGIDRTTATYDSTVKSPSGTLGTADVLTDAVIRDVLADVRIAAGKEPTVMIGGQDTYSEVQSIYMNAYRIQNTADLRTEFSVGVNGVDTFTGTGAGLHISTIYGLPFIPSKDTPQSAEGSVDDLFILNTSADKNAPNKPLVGIQVLKPIVYYEAGKRQQGYPFINEAFNDRALYNMLAETTCRNFKAQAKVRDIASGI
Ga0208919_100008361	F083233	N/A	MSVDISTREHKHIQMTKATFHSETLAPLKKADGTKGKPRFSVEPLVYIQGVGWETVDPMASGNEFMIAFYNYVRIKELMGYEHTGLDSSEIKTVLENLWGEKIE