Scaffold Ga0209348_1039698

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1039698
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1638
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023319	Metagenome	210	N
F024676	Metagenome	205	Y
F070656	Metagenome	123	N
F095588	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10396983	F070656	AGGAG	MSKKILEAVREASISIACCLDEPNDVSKKDLEYIQDQITKIENYLTPFYLEELEEIKNE
Ga0209348_10396984	F023319	AGGAG	MSKKIKCQRKDCSNKAYPEDMENRASNLLLCDDCYTEIRYLMADYLDIHIQEIKI
Ga0209348_10396985	F095588	AGGAG	MKYKVEIELDFDKRPNKKDILHRLFDVMKENKVEYKLHKYNNNLWSQIKRSIANDKYK
Ga0209348_10396986	F024676	GGA	MYNKTNVRKQMFVIAMPYPKHKELPDILEEEDGKVMYFKREKDAITFLQDLYDERNIHIQALIDDNIQIMRVQ