Scaffold Ga0209348_1019520

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1019520
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2553
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Stopalavirus → Stopalavirus S38C3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10195202	F101298	N/A	MIAYIWYCYEEFTYPNFMTQNDRDFQKVLQALTAFDKKLSTLEDVVKNIAEATANYASSQQNLNKEQSELNKELGEALKFLGENLSQIVKYLKLKEGN
Ga0209348_10195205	F014114	N/A	MKKYKATDPEMIQAQKDLAKLSNLSDRVITNDKDLFDELSTIQRKLCEISELKAHFLQRYEDILDEQHNLETQLCVFQHEMLHSFELVFRYYKTKKKGFK