Scaffold Ga0209348_1016830

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1016830
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2801
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y
F077194	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_101683011	F077194	N/A	MNNQTLTILDFGSGEVHQYHDINYDKYHMELDEFVSVQLGYNLNEVEYMFHTDKTIYNLTNEI
Ga0209348_101683012	F050305	N/A	MNNLNTTIDKVAMSEFGIHYYQLGDNEKQWCHDEMVNNPKWLKKDWEEPLWSMADKWEAGLPIYEEIIITYE
Ga0209348_101683013	F001740	N/A	MYNPNNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYPGEANGVFMTLSKSQQDDVYELLNQIL
Ga0209348_10168307	F009959	N/A	MTEQEVIDKVCDRVVNTIYNELDYYMFEELGYTETNDKYVEDAELLINKIINNLIK