Scaffold Ga0209348_1016066

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1016066
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2880
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F033839	Metagenome	176	N
F043451	Metagenome	156	N
F077401	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10160665	F043451	N/A	MSNIQPWLYPNNPFSVDRVVYTPTLSAHILEYQEEMIDAEGNVYWKTVDSTTFGGSTSVKEFLEQMKDFYETKSCRKDKM
Ga0209348_10160666	F033839	AGGA	MNNMSPITRAFLTVGIGVFIGILPVFMIINTLSTTAIKLCGRYGPNYTIIDLDTPLGTIKRCVAKD
Ga0209348_10160667	F077401	N/A	MTMKTFWAWKHAINNTEKDKSGFTKILARDINSAMNKAQKHYKHHMFNSNFNVSVMSGETDEHGYAKECEYTTGKWTRKAWSAYNYFHSLAPDMKERVYNHYRNLDAHWNDKSKAELQITVGQLS
Ga0209348_10160668	F013777	AGGA	MTTMLGPTSIDHFKNLHDHYVKKKHAENIVHAYATPYHNDPADNPAAMWSFVMHEKRDLERMAFKSYIHPQGDFQNGYYDICDIEKGTFDCDNMNLGEVYPVILYAHHETLLTVGCVVKTSDHPDIHGKEQLALWIYYPNAENIESFDMASGHIYK