Scaffold Ga0209348_1012490

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1012490
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3344
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050008	Metagenome	146	N
F052258	Metagenome	143	Y
F063169	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10124904	F063169	N/A	MESQLIDDILSHLDEFEKTGDWFHFSLALDALDDLRKEIESIIK
Ga0209348_10124907	F050008	AGG	MNPYDNMNETQRELVLDLAEDFAPFVKKVENGMALTKNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGVSDAMSAFFPE
Ga0209348_10124909	F052258	N/A	MKNTKHIVNEHKLVNSQRELVLSVIVFACMVGAGLIILLALAMG