Scaffold Ga0209348_1006342

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1006342
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5002
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001918	Metagenome	617	N
F002334	Metagenome	569	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10063424	F001918	GAGG	MKIALCFAGQPRFINLMNFGNLTDGHDVTTYAHFWWDDEYRGDMFAWNSELKYPDDYDPIHHFEQRMNPKKLVWEKYPKFDMSPYKMVSQMEFPLSDDVVRQSIYRQKCQWTSVKKAADLVDDEFDLVIRMRTDLEFHDRVPLEACKGNGLYMMNGSYQAGAGREYCDWFYCGPHKRVQEFDPLKVFDDFYADGIRHMHELVIETLRSLQIPHSVLDLKAWMMDRSKIK
Ga0209348_10063426	F002334	GGA	MTLGVFHQVCYRPKATEEAIKSFRQFHPDTPYVLICDGGKSFHRVAKRYDCLYVHEEDNLGYRDHTHASGIYGMTKEEVLEWLRRFRLACTLCNTDHILMMEDDILIRGEINVPETWEFAGQAKPGNLLQEEFMTYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYDRVIKIFDEEFDYIKQNLCGNLGWVDVWMPMYYFLSGKKYRHNNLLTETTSNPIWTISKEPIVHQYKVHYE