NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1006067

Scaffold Ga0209348_1006067


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1006067 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5146
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014114Metagenome265Y
F038722Metagenome165N
F056669Metagenome137Y
F101298Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10060671F038722AGGAGMNITESRDEAFEAIAEMLRSNVKKTKIASKLAADYCVSDKTVYKWITRVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKDDKDDELRRKIGAILNNTYL
Ga0209348_10060675F101298N/AMNQNDRDFQKVLQALTAFDKKLSSLETMVDKMVKANYNYATSQQELNKQQSSLNKDLGEGIKMLGNSMSDIIKFLQKLGGNN
Ga0209348_10060676F056669N/AMSLIKSYLLSIQELGYDPYHLNKLSSEEWDNLLTKALKSDKKLYETLILTRCKFSLKFTDCDLTDTEEPF
Ga0209348_10060677F014114AGGMKKYKATDPEMVQAQKDLAKMSNLSDRVITNDQDLFDELSTIQRKLCQISEMKSYFLQRYEDILDEQHNLETQLCVFQHEMLHSFELVFRYYKTKKKGFK

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