Scaffold Ga0209348_1005293

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1005293
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5588
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F038722	Metagenome	165	N
F039181	Metagenome	164	N
F056669	Metagenome	137	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100529310	F101298	N/A	MNQNDRDFQKVLQALTAFDKKLSSLETMVDKMAKANYNYATSQQELNKQQSSLNKDLSEGIKMLGNSMSDIIQFLQKLGGNN
Ga0209348_100529311	F056669	N/A	MSLIKSYLFSIQEMGFDPYHLNKLSFKEWDNLLTKALKSDKKLYETLILTRCKLKLEKDRAI
Ga0209348_100529312	F014114	N/A	MKEYKATDPEMIQAQKDLAEMSNLSDRVITNDKDLFEELATIQRKLCQISEMKSYFLQKYEDILEEQHNLETQLCVFQNEMLHSFELCFRYYKTKKKGFK
Ga0209348_10052933	F039181	AGGAGG	MPKGKYYEYQIKRSALDQDYLSGNIDDFQYARESLDLDLEYEPYILAQTINSEVAKKQHEKD
Ga0209348_10052937	F038722	AGGAG	MNITESRDEAFEAIAEMLRSNIKKTKIASKLAADYCVSDKTVYKWITKVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKDDKDDELRRKIGAILNNTYLKKITFN