Scaffold Ga0209348_1004711

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1004711
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5974
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021673	Metagenome / Metatranscriptome	218	N
F090257	Metagenome / Metatranscriptome	108	Y
F102059	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10047111	F102059	N/A	LDVELKPVSRFWLTDWGTYRYNSITKDGYKTSFYYRDKLEIGDAVKVRGTVTKHTNDTTTINRVKVIK
Ga0209348_100471113	F021673	GGA	MKSVWSVTICGKNDCVTLSNEEANMLAMKYGKHIVMYDMTKRHGVKPEYLHKELRREQREWRGVSFSKGVKAGSFGGAAPVNWTYEDLINVNLEALNG
Ga0209348_10047114	F090257	N/A	MLIRHKYVVFKDKKEISDLFGDSEAAAGLVVAVCATLFDNGIRVIPIGGLMRLLGVPNEKAKVHDDKAFQLTDDFYEQLEKMGFERIDEAQLQLPTKKTLH