NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1004572

Scaffold Ga0209348_1004572


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1004572 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6077
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C620(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018189Metagenome236Y
F021321Metagenome / Metatranscriptome219Y
F073646Metagenome120Y
F074765Metagenome119Y
F092069Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100457216F092069N/AMTTVIFEYNGRSKEIPIDEIKSVNDVADAYAKLGLKTKQPIKRRLYYTLPNGKYHSFLSNKNHKYAVACTREDTGLGFCYTDDYAKAKTTAANWTNKFNNAKEGFREFVVIDVQEVE
Ga0209348_100457220F018189AGGAGMELSKEQMEKVIEELESSYNSKIFDDENLIEIINLFKNYLNKGETK
Ga0209348_100457221F021321AGGAGMNRDYMANMLFNINDVVETLKVHSFDEKIKDDYNENQFEEEPKTLMDIPKDWEGSTTTIGDCLLDLQSHINELHDYFLKED
Ga0209348_100457222F073646AGGAGGMLQSEYLELAIELYDIYSAHDIHHKRWLAARELEKLKGGPGLIAKVKKMKGKMSELQPVFTDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSD
Ga0209348_10045727F074765AGGMTKTLTPKQTKITVSKLSHRLSRNGWISYNCELRKGRTTLAAVDQEGVGGDERVAWNNTEHYLLIHHWILDTQRDFWREYEVETINYMVELGHKTMKDSIKEKLDLMKKFNLWEKLAKKKPKSWKEARAIQQQLDFHDDMVGAWTTVYVENKLADKYYD
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Institute for Fundamental Biomedical Research
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