Scaffold Ga0209348_1003700

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209348_1003700

Scaffold Ga0209348_1003700

Overview

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1003700 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6879
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (47.37%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017657	Metagenome	239	Y
F067817	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100370016	F017657	GGAG	MEDNRTEALNKAKKAQQMMAVEAEMMKQLQPTVPEVTAANIDMQPGINPNPKPDGPVINPNLFNPGNMYPGISGSSKLAANWNPMMDSAAG
Ga0209348_10037005	F067817	N/A	MLRPNTELLTEDVIQSGPRFVDISKGILTAEDKRSKAVNKATKYKKGLL

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