Scaffold Ga0209348_1002692

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1002692
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8256
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032077	Metagenome	181	N
F051140	Metagenome	144	N
F052258	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100269213	F052258	N/A	MKNTKHIVNEHKLVNSQRELVLSVIVFACMVGAGIIVLLALAMG
Ga0209348_10026925	F051140	GAGG	MLVEQVTDTLEKEDDITLNREWCKEQVDRLCAWEILRRYVLHETSVAMTNEELCDTIGVSSTHVIRLLKSVQKRLISNNDN
Ga0209348_10026929	F032077	GGA	MDSEETSIELKDRMRDALAPMLAMEQERTAKNSLANNNPQRWLAAASMFLAGSSMHDVKMKLDMHHYIARRINGIVKTCDEARVFRQERAMQLASTIDEISSIGEKIAASYLDGSAEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNVQKIEVRHITTPEEAMSLIDALPEAEVIDVEEDG