Scaffold Ga0209348_1000667

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000667
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17397
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002215	Metagenome / Metatranscriptome	582	Y
F004325	Metagenome / Metatranscriptome	443	Y
F021558	Metagenome / Metatranscriptome	218	Y
F027869	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100066715	F027869	N/A	MEHKKAKKAKKMAENAIRLMALEEQMAAAQESDLQPADGYVTPMHRIGTVPPTTYSLGNQLDGTTTQSVINT
Ga0209348_100066716	F004325	N/A	MKKKKKPSTSEKADKFLAGLGTAGGPIGSPQLVAFGGTDIQNQIVSGNTDEYARIRMRQGDTRVGEAAAMPSDLDASYLKLNLPGSPLPANGLLAPRNIRAAEQTQDLIAANEQMFLRQYLPAAGLMQLPVGQPPLESKKGKK
Ga0209348_10006673	F002215	N/A	MEPQVIAAIISGSIGAFAGISRALGNFNKKIDKKFDRLQREVDDLKNSVIHDYVLKEDFLREMQGVHTKLDRILDHLLNHTN
Ga0209348_10006679	F021558	N/A	MSVLPRTNLGYTLGVRRDKNIYGKGERSQKNPFEESRGRTRMAGEKRIDLFTTEQDYMATPYIRGTNLPTRFLTSLPVSRLENSDG