Scaffold Ga0209644_1034104

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1034104
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1139
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F084353	Metagenome / Metatranscriptome	112	N
F103414	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10341041	F103414	N/A	LSSFIFRAAGFSEIVSLLKETNQRLKNLERLLEFTLSPPDLSKYKQGMSLDDIPRKKLSEAGTPSDQA
Ga0209644_10341042	F084353	N/A	MDWKRKKTVIPRCDCSIHDVISGIVEYLIITPIFALGYLMVTIPWMLFVIGLDADQFANFVWQSVMVDLVVAYPLAKLVMRLKPRIEKIAKLGH
Ga0209644_10341043	F001235	GAG	MGTKLNVDTGGLDIGKKLWDKHQADEYTHVDHYKEAICINCFSKDASAATIVDICGECAGKRGREPLLATVTQKMYGLCFFCGKHRFNIEQINARFCRKCHRKIANVTKEYNKKGGMFGADPFWISMRKKHGKDWKHIMDKNTGNRR