Scaffold Ga0209644_1017548

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1017548
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1535
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012984	Metagenome / Metatranscriptome	275	Y
F015739	Metagenome / Metatranscriptome	252	Y
F018017	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10175486	F015739	N/A	MEINPYGKGFKMIRPELHTFKWAPKTKSKEDLKLVKDLEQLVKDRDLTKTQLTRQALEDFIKKNICNGFTCTDLKN
Ga0209644_10175487	F012984	N/A	MEVSTFEPLSELQKQQYLTELGLEPVLSYYNNEIKKHNCVCFKSLELREKRDRCFKLMREEYQELC
Ga0209644_10175488	F018017	N/A	DNTTTKINSLWANQQKIVSLPPLSSLHLHGNHSSGLRICHTCRGERFVVIRSKWDNRLTYKKCMACSGNGSIDIRTIE