Scaffold Ga0209644_1006891

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209644_1006891

Scaffold Ga0209644_1006891

Overview

Basic Information
Taxon OID	3300025125 Open in IMG/M
Scaffold ID	Ga0209644_1006891 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2308
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F054091	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10068911	F054091	AGGAG	MIIEEIPYFVEFIVLGIVLGFGYGFTKLFLNHAKDKSRVKRSERKAKEANSVE
Ga0209644_10068912	F002100	AGGAG	LSQIPRDSFRPALIKPTYNVGDYGHDVIIPLNCLTGSGTTTLTPSTATFVQVLEDGRVPVDEVNQFITDSDKMQLVHAGNDTDFDTTFEYLPDMSFQAYKASFSVAVAMKVSAYTSGNFAISSVQLTMKVIGGGEGDQVIVDKIVNPGMSNMTSATEQVAILNVDTKTSAKVPDKPLSIQVKVDTTSGTGTYQCGIVPLFCYFGSAVPKTWTTSSVIVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0209644_10068913	F008596	GGAG	MSGAWDIATATSLLTGVAKVQINGGNNLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTHINIVAPLLEAYECNTALQEGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESSFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGCAGLAGTMTPGNLQLASYHNTHMPMKTSCKISTAFTNDITQSAATRFIMGVGYTKQG
Ga0209644_10068914	F003270	N/A	SSKKKNGSKSIKSMLRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVAANILTGSLTGRVAFSDQYNPSPSGQPRINPAGIINKWTGIGVAAKLYGKIGKSMKLPEAATIDRVGNKVIFGGAIGGFFDPPGNPGGYVSTANVTPNVMVQNRAQTDRAYAVAQRNRGFVPSGGFDSSTGSAFR

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