Scaffold Ga0209644

Basic Information
Taxon OID	3300025125 Open in IMG/M
Scaffold ID	Ga0209644_1006789 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025125 Open in IMG/M

Scaffold ID

Ga0209644_1006789 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2323
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2323

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F055659	Metagenome	138	N
F056142	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10067891	F055659	AGGTGG	MTGYANSPSGYMNPVAVDKIQHPDYDAKAAENITMRVVQYLYPVIKNSVEMLETLCKETEAQIPTDLADNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWATEDNAHHSVLNWQNPYGSDGTLQQAPAVTQGNPYGQQMNPYGQQGYGQQPYPQQGGASMFKPWTWFGVGTGAAQIQPWQLPPPQIDQLHNGEQYYTANGGGPPPLAQQQGYLTLPVGAIGWNMAGQPIDYNGMVIATTGEKLLNTAISKIL
Ga0209644_10067892	F006818	N/A	MHGGYSIQMTGPPQMVTYSRKPQSQVEAEPEREVAPAPNILHRQPVAQRMMPTAEQMSDDELDLYVQRLTMRHKRLSRKWMGLRRKHGKDECPYCGMNTGGGFCKIHQRDYDEYLGALSTRQNRSFGL
Ga0209644_10067894	F004336	N/A	MKFIRNMLFTTGRYPSTMGAGGQQDVDFCRYIEWMWFKRCMWLLGVSLAFGGIGLYVGYFYDDVVVEYGMMIWGVAWLYNGFLLFVMAVSMILAMLKALIVKAFISPEVQVGQAATRTAQMMRKGGL
Ga0209644_10067895	F056142	N/A	TGKVKDFTMKGVRLKTFDMSECIVGCDELIHAVVENLTPNDLFRWQTTLSVSKAIPIETVESICKVRLGEHALSEIVDEEGFKQEAYLEFHDDKLDFKPNYRRISIFTYHPKWIPMPEGAEPIGYEVAYQLSRDFKRDVYQSLDSQQMSYLDTSFVVTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209644_1006789

Overview

Ecosystem & Geography

Associated Families

Sequences