Scaffold Ga0209644_1004720

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1004720
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2707
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008691	Metagenome / Metatranscriptome	329	Y
F054091	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10047201	F008691	N/A	VKKNLFENRDTFVMLVVAGVVGGAITRFVIPKSVTEGSVFSRFKSWFGYDQEEYEEEE
Ga0209644_10047202	F003270	N/A	MAKKRGRRKSKNNKHKSIKSMIRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRTLFSDQYNPSPSGQPRINPAGIINKWTGIGIAGKIYGALGRSMKLPEAASIDRIGSKLIFGGAIGGFFDPPSAQGRISTYAVTPNVMVQNRAQTDRSYGVARSNRSFVPLDSFDYSTGSAFRR
Ga0209644_10047204	F002100	GAGG	MSFRPALIKPTYDIANFGHDNSLPLNCLSGSTVTLTPSSATFVQVLEDSRVPIDEVDMFITDSDKMAMVHAGNNTDYDETWTWEPDMSAQAYQISFNFAVGMKVSAYTSGNFKISNVQVVCKQIGGGEGDFVYLNKTIEPGMTNMAATGEQVAVINFSTSVSAKVFDKPLTFQIKVNTDSGTGTYQTGIIPLFCYLSVAVPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNRIDTGIGL
Ga0209644_10047205	F054091	AGG	MIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKNKIRRSERKAKEANSVEDELDKYLNNIPAITQHL