Scaffold Ga0209644_1003966

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1003966
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2915
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009609	Metagenome	315	Y
F014745	Metagenome / Metatranscriptome	260	Y
F044542	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10039663	F009609	AGGAG	MNIQGKKAKVTKTITSVNGALHEGEVVLIERRENGHWRCRDNMGRIFYMEESNLKVVNKK
Ga0209644_10039664	F014745	GAGG	MSRDIFGNKKVVKIDRHTRSKYTDSDIRWEKFKMVIWLLLGGIYAYIILQPQHWF
Ga0209644_10039665	F044542	GAGG	MKHKDYKKLMKTPFDELSEQDQKKRKKEFHRRLEVAQMFITGMVKGHVNDDIGKLMEDDDPMKDTVELLKLQINEVEGMA