NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1002007

Scaffold Ga0209644_1002007


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1002007 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3855
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012984Metagenome / Metatranscriptome275Y
F015739Metagenome / Metatranscriptome252Y
F018017Metagenome / Metatranscriptome237Y
F031531Metagenome182Y
F103065Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10020071F031531AGGAMLFNTDKNAYYDLKDGQLLAKMEQETKSEFKDLKTLQLEKDKTLVVKQITNEAWSDETKARGVFFIEEKNRDKKGITLTKSDCGKLAIILKEISD
Ga0209644_100200710F012984N/AVDQSIYEPLSELQKQQYLTELGLEPVLAYYNTEIRKHDHICFKKRELFEKRDRCFKLMREEYRELC
Ga0209644_100200711F018017GGALKNDSLNADNTTTKIDSLWANQQKIVPIPPLSSLKLHGNNCGGFRVCHTCRGERFVAIRSKWDNRITYKKCMSCSGSGSIDIRTLE
Ga0209644_10020073F103065AGGAMKQNKRTSKGSNDKIPIFAVGDIVRIVPNHKPYSRGLTMKYPHSKQKENIDLVCFVEQVVCNDRYSLYALEKPMKPSKLFKHDKPQWYVGDLLESCLEPYSIKCEDCNDLINKMPLEAIRQYKHFIYPDDKKIILSIIENQEDLK
Ga0209644_10020078F015739AGGAMIRPEKHTFKFSPKTKSKEDLQLIKDLEQLLKDLDLTKTQLTRQALEDFVTLTKKLKKAC
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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