Scaffold Ga0209644_1000976

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000976
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5264
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011408	Metagenome / Metatranscriptome	291	Y
F013189	Metagenome / Metatranscriptome	273	Y
F050757	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10009763	F050757	GGA	MTKKKDGTTVWQWSELAYKVDPELSAPEKEYIFNNGNRVFYKPRKRINVKYGNRKKS
Ga0209644_10009764	F013189	AGGA	MEIEKNLKFVAQEHTVAKNVAEHLEKKYPGWLWAVHVMDGTVVVKSMRLSGNWGFVLHEDKIDNDYISVTRAGGEILERFRQKTSGFNQDRYMDLTMDHRNQLDGDFSPGTS
Ga0209644_10009766	F011408	N/A	MSMDYYDPTDVNVDELIKRVRIGRSTEELIRTPTGSSLISRATQDYREGIEALQKMAMQEWVGSSEEELQQYRKISNNLATPLKLLHWLDAILNDGENAESIARYKDTGEI