Scaffold Ga0209644_1000791

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000791
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5781
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010273	Metagenome / Metatranscriptome	306	Y
F076175	Metagenome	118	N
F103402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10007914	F076175	AGGAG	MILEALRGLAALPKLVEAVERIGDKLDDKAALERLGDKRKRNRAAIDGVLESSSGQRGEDDISPAVSGGDTGGS
Ga0209644_10007915	F010273	N/A	MKEKLKSRKLWMAIGGLLTVMATEWFNLSPELSENLISAVVIIVPAYIGGQSIVDALKEYAAKK
Ga0209644_10007917	F103402	N/A	MPNTYNWTRLEPLVKDEDDLDNVVVKLVCGMTASDGNGNGAYIDTMHTLAAPDPSAFIPFADLTQEWAVEIADAVAESDGFKDSLDQQIEAAKLRPSPKPFSWQEAKVAEFPPDDPVRVR