Scaffold Ga0209434_1029816

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1029816
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1790
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024106	Metagenome	207	Y
F073529	Metagenome	120	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_10298161	F024106	N/A	GSFQVGDLITLKHHPGAPIAMVVSLSASVFDRIMIQFFDTSRAEMAAPGHWKVVSRNENRPEDR
Ga0209434_10298165	F073529	AGGTGG	MKIGDVVMLRKGRYNFSATEKAKWTWTDVLGVITDDRGFVDGTAEYKVYTVDNKHSWEHIEDLRIPD
Ga0209434_10298166	F077179	GGAGG	VKPNDYKPGDLILFFSGNSRFYEGPEEIGWVVRRDDEDANEPAVLVGFPHRPSNLLHYYDVELREWEAGGIIEVKRG