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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025122 Open in IMG/M |
| Scaffold ID | Ga0209434_1008879 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3837 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | 300 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012401 | Metagenome / Metatranscriptome | 281 | Y |
| F027156 | Metagenome | 195 | Y |
| F029400 | Metagenome | 188 | Y |
| F058991 | Metagenome | 134 | Y |
| F084099 | Metagenome | 112 | Y |
| F090254 | Metagenome | 108 | Y |
| F106167 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209434_100887911 | F027156 | GGAG | VIPKVGQLLRWYDNPLYCADDTELENDVGIVKEVQLEGINFFDNDEYEYVVIIDWCKGPHHSQHDQQEYEESIRTNEIVVVR |
| Ga0209434_100887912 | F058991 | GGAG | VQTHADFRIGMLVRWHGDTHSNDDVDDLGIVVKMPGADWHGNYHIAWSITNTVSHHSPDMIEESLYQGHLEIVW |
| Ga0209434_10088793 | F012401 | GGAGG | MIEGLLSLEKAALERLTEDRIASGSLPPEVEEILIGAGIYWDEIEHEYFSIEVFQREVFERLTTEYVSQNYA |
| Ga0209434_10088794 | F090254 | GAGG | MSIEETNYSAIDIVNLVDGAELVTVVREIYLCVWRGGSVVDVYDLTDAGKQADYQVLPMFVSRSLLSAHDAIDDYFLELDLDNENQCLTTEPVRVIVDIESGDPTEVN |
| Ga0209434_10088795 | F106167 | GGTGG | MKIGDIVKLEAHPSIDWMHNYLEEFFEVVDFPTETGVLLRIVGSDPAWFWHVGKDNFKIVEEKD |
| Ga0209434_10088798 | F084099 | GAG | MQVGDVVRMNTPLTPERYGLGLIQKIVQADSLVWEGKLRAVYHILWPDETISCQYDNEIVLVGRVE |
| Ga0209434_10088799 | F029400 | GGAG | MKIGDLVTFCPESWGTPLEDRPIGIVMNVEDYRDGIDPEPFLMVTALFSDCDIPYSSNIKEFEIVNASW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |