Scaffold Ga0209434_1001406

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1001406
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10935
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065100	Metagenome	128	Y
F088745	Metagenome	109	Y
F098231	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100140614	F098231	GGAG	MEVGDLVKQRGTGVAIISEYIRSSLSMGCIGIITIVHDKTTFSYDGRNRGDITVQWSNGKTETLPEIYLEKIEDE
Ga0209434_100140615	F088745	GGAG	MSDDLDIKIYLALDKTEHQIRRAAYLSTAEPFQKKIYEALELIKEAKKEVEKRLDK
Ga0209434_10014069	F065100	GGA	MDAIQERILKLSKEMLEKLKNKVFGDSQVGKFEVGEIIRWPGWHHTKEDVTRIYKYGVIMSIYTGVLDKRKIQIAEILPFGGQKPVKISLLLVKKSDLED