Scaffold Ga0209535_1194900

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1194900
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 577
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005072	Metagenome / Metatranscriptome	413	Y
F047923	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_11949002	F047923	GAG	MAAKPEVIRQAKKFLENKNISIKKVKPHLFAIASNGLRKNFDETLNFFMKGNNGTLDSSNQKKD
Ga0209535_11949003	F005072	AGG	MERLIQAIKKKIKDHKQELSQNLLNKGVDNISEFKRVYGYGQGLDKAFSIINETIEKY