Scaffold Ga0209535_1083825

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1083825
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1197
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053631	Metagenome	141	Y
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10838253	F053631	GGAGG	MIRAIYFALCFGLALFGLFVITHINLTIGLSVFALFIVKFLLMLPTYQEVK
Ga0209535_10838255	F089429	AGGAGG	MKAKDLNIYSIFSRTYKKKMFSFMDFGEIGRLKKFKTIKQVSNVYQFPIHKFYNKLKNKA