Scaffold Ga0209535_1056433

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1056433
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1635
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039584	Metagenome	163	Y
F094402	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10564335	F094402	AGGAG	MGRDFTDDIDDCCEAIVGHRNWGFADSDLHKTVETIMSKRNGDSPKSDRIEHIVIFYKDSHEEEEEXXV
Ga0209535_10564337	F039584	N/A	IMTTCRLKKRKVYKDKMACIYQGAQKTFTLDFTDLANGCPRKYKCVLDKNGKEPSIDSVMESLRSIAK