Scaffold Ga0209535_1021067

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1021067
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3299
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F011192	Metagenome / Metatranscriptome	294	Y
F081762	Metagenome	114	N
F106097	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10210672	F011192	AGGAGG	MTAKEMNDADFVNFQDDFYNLLEKYGVSSIDIEHPQFQSICNLRNRVAEFIEQENFKEVL
Ga0209535_10210673	F081762	AGGTGG	MEYTYPPKILDTLVSKSSMRNTPLTEGGVHHLPYITLSLIDRGLADTRAIAIGNALEKGDMSGLSWAILECDSYNFPLLVKLEPRLFEMLLMDGSIEGDWSVLSERLEEVLK
Ga0209535_10210677	F009045	AGGA	MNKLNDNFEASRVSRGNRHIVKGQIVQGDKYEVDGIRRAFWSNPDSTHSCHMWRMLKGVSVDRITVDSWEGETLNEFAQRTETILLGGSK
Ga0209535_10210679	F106097	GAG	MNRQQMIDILLEENVNGDWTDNYYFEKDNLNLAWCESLELWLMLDYKTFPKTFESSCTLEEAFKYVFADQLSDEGIKQFLDDRGLI