Scaffold Ga0209535_1018882

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1018882
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3553
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F058519	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10188822	F006892	GGAGG	MSDTGIIIPLKERIRDLETINLAHQKKNGQLRQEIQDKDKLIKELQEKIKNPLNKMREQGEI
Ga0209535_10188823	F058519	N/A	MANHLKIIGEAYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNLSVEECIADKEIQDKIKSYVTVDMKDQMKFEFGIKFLKDICQNHIENIKELPKQKWQTEIEHVKWIDPINVPFRMFIDLTGDTHINDLKNKFPTVKYAPLKTKQTKENPNRIGDWTCSHPKIDQRAFTSDLMQIALYSHTTGLKPSLSYASATDRILFTEKNCEDLQPENLKRNLQELIAYEIAWEKKLKAANGSVDELLWLNIPDFSEIRKGSFWWNSIPQEYMEDYLKTYV
Ga0209535_10188826	F008915	GGGGG	MESNQVTLDLYEMQSAAHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGSFGEAAIAKFLKIKFTFTCNHGSDADLIFKDLHLQVRTQLPKNNNSLIIRPKAKPNEFYILVIDEAPNFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN