Scaffold Ga0209535_1018328

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1018328
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3622
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F006528	Metagenome / Metatranscriptome	371	Y
F008795	Metagenome	328	N
F026409	Metagenome	198	Y
F096201	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10183281	F008795	AGGAG	MIKVKLEANEVELALNIAAKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFL
Ga0209535_10183282	F026409	N/A	MKYLIIFILLSSCSFSDYDFNPSTTVLKQLIKGAKND
Ga0209535_10183285	F006528	AGGA	MKDKEKHSIKDIEKLAIETFKNIIEGSRSINGVTWNKIKNLKRKDQIICLKQLSQ
Ga0209535_10183288	F002318	AGGGGG	MKAKDYKSITNILESQNKGKKFYDFMDMEDVKYRIKEDIVPLPKQYFNNIVKLIKGEK
Ga0209535_10183289	F096201	N/A	MKANQPKERRNTMNTYLITNNKNSLSYTKDFLNTSEARHWIINHLDLSNEWSINPVKKLHHTAYKKNYKNYILSTIEEDGEGKPLTSESEKISYIFDRFNSEYGFMIERVGKYKAMSEWLSGLSLNIEFYNDAIVDLAVKMGSIEPNPNDKMKDKVAANYWDFMANVILGFEPKKQVA