Scaffold Ga0209535_1015543

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1015543
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4042
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028622	Metagenome	191	Y
F031512	Metagenome / Metatranscriptome	182	Y
F086161	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101554312	F028622	N/A	MKFNDDRGSLDLTKQIDELIIKIKNLDGLEKIHRETNGDLRLYIVKLEKEIYQLKRDMAFQKENHQVDIMQKDIEIEKLIKK
Ga0209535_10155432	F086161	GGAG	MNQHTTFVLNTEDTFNKLQEASEKKAESLFVYRKLEKYEKILLAKLKTELRLNHDKITQVELADEAYRHQKYNDWLIAYSKAERSYTLDKDHYNNLLSLKDMRITEESSARYLINKK
Ga0209535_10155433	F031512	GAGG	MLNEKMRNLVDALDRTHQSYVTKLVSNGTVSLEASKLGREYKDIQREIIVVDIVEKKQIY