Scaffold Ga0209535_1015170

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1015170
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4107
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F023748	Metagenome	209	Y
F029779	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101517012	F012581	GAG	MAKYILYAKKVYYYRKEITAQDRKSAEKRGADYEADDNAERLFEPTGDEFYITSIEESDD
Ga0209535_101517013	F029779	AGGAG	MSDKEKYEEICQALVGIDATERYTHEDILSYVYNLKNTEEKFYDNKN
Ga0209535_101517014	F008925	AGGAG	MTTKTKPIIDPITLDLINKLKAIQDTVNEGAWEYVHIGDILRLQDVFHTAITHFNLKKKGGIGEYGDDKGKYTEFWHSDYVCHTDPEAYDPSKVEEEDDE
Ga0209535_101517015	F023748	AGGAGG	MSEYKYTYRFSEQTVDTRYYKVESNTKLTRCEMQDLAWSVEQIDGESFRCNEGRATFEGTEVGDDAQYQMEEGQEDLLDDDITDRT