Scaffold Ga0209535_1015003

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1015003
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4141
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F009491	Metagenome / Metatranscriptome	317	Y
F030052	Metagenome	186	Y
F058131	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101500312	F009491	N/A	MSTIKNTQIKILKLNNKTYLPYQLHQLPKFFDKYTTDFFNLKGYCYINLNDHSDTFNFQNFKNRLTFNKDIHYSLKR
Ga0209535_10150035	F004523	N/A	MEYMSTEITSAREAMTIFKILGIKDVTTNRQRENGTTVYELPISQVWQTLQPKPMRFATYKAGYVRNVTEGLASPYQINKTKKRPAGTDGYHFETVERTLIPHWEDRLIYLAKFIIKNYYQKTTYVMSDYVMDCLREAYVEQNKTGLPFGDDIQVIINGHRYNLS
Ga0209535_10150037	F058131	GAG	MVVTLPNLKTYTTNTVNNMTITFKNIGKTYKVSSDNTVKVIHHHDSIVSVCGEYFKNKYTNEWLSELDVQDSYDSHKLEQENDNKYY
Ga0209535_10150038	F030052	N/A	MDNINDMNNKLQQLEDLLQVHDWYYAMSDDNYYYKLGRKQYEKIWKLMDELKDGGYFTESENLYDKYSK