NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1011938

Scaffold Ga0209535_1011938


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1011938 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4819
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017994Metagenome237Y
F037817Metagenome167Y
F080032Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_101193813F017994N/AMELKEFVMHKTRWLNGFSQHMKLGDINFKTYMRMKGMTEEEFTILEARSAK
Ga0209535_10119383F037817N/AMKIFSKVFVPDSKKGMEYVVTAEINSVNPEMDSRPGPYYFVQEVKNGTTKKVRKANFKQGRFYNKADVILA
Ga0209535_10119388F080032N/AMTEKKGQTVKLKYDFPTQRCCEVYVPNLEDWFRITCKEFRSWVGKRRILHIEGDDRMKMDIKYEYKDYNGPTYLFDSNKKINPSNYTQNKVAFLHDEDPRQFTPRNGRERDYLHKVKAEA

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