NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1010251

Scaffold Ga0209535_1010251


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1010251 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5319
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F000896Metagenome / Metatranscriptome845Y
F003357Metagenome / Metatranscriptome492N
F006271Metagenome / Metatranscriptome377Y
F014790Metagenome / Metatranscriptome260Y
F015099Metagenome / Metatranscriptome257N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_101025116F006271GGAMLIYGNTPRDIMRMMWRRRIKLLSIVLAVAVAVMLIGCTIGNKKVNPPLQALDKFWDTLGSGKDKTKSKDE
Ga0209535_10102513F000896AGGAGMTNKINLVINLSILALLIYLSVAVKQIQDKVFPDPNIMQPAMGYDNSVEMKYNIQTLLNNILEDAINEQEKQ
Ga0209535_10102515F000302GGAGGMVAVMSQDTKDRIAEMERQKIDLESQLELLGYSGNLVKMHQIEEEIYEIEDTIRKLLP
Ga0209535_10102516F014790GGGGGVVDAITIRAILNYRHLTKGVEKMDTINTKKILDFTKLTGLTERITMSHGTLYVTLLQPERCDFFHGIIRTFYKDNINTDGGVNMYAVGDEFAFDFVPADREAPVFADEDEKGVWSEFAEEEMFNNMDDEDESPAFPSYYEVPEDVDTALDLEADAKEGR
Ga0209535_10102517F003357AGGAGGMRRNKWIMKEMFGDAKNNLGWLFKGVLVAGGFVAGIKILMFFNMPKEIVFPVMWVAFILVMLYKWYSMKYDWQNDAPNRYDRAVKKYIKKLDTGGK
Ga0209535_10102519F015099AGGAGGMTHSSKNWQVIYRDKDSLAGCFVWAPDEAQAEKKFKARKEFEYDPEFDRDEDEGNIRSIYEYVTPQPKIASKSKMDELEAFVKFPQFYPFLKKYDSGDEKALAKQIPLTDDNIAIIDGIAKVMPIIRRYRGPRTRGGFMKECHKQDAERVSIYAR

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