NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1010052

Scaffold Ga0209535_1010052


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1010052 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5385
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F018962Metagenome / Metatranscriptome232Y
F056630Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10100522F004606N/AMKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMRFLKQHFFDMNFRHMFENRARKMILKAEDFKTAKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISSRPFFKGPLSIDSVREFDARYKKGWADKFKKGNIDINKYLNSLS
Ga0209535_10100523F008190AGGAMEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQSYVESLSNKPITYKIYHSPDITVNGTAELFDDIIEFE
Ga0209535_10100524F018962N/AMIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYESNENDKNQYSYVKRFFFDLCDDLGLELGSKFDKTVLDINTQWGTHYEPTDKDIEFKIKRLKSELKELEEWKKNI
Ga0209535_10100526F056630N/AMQKDNIKETPQEEVPELKYYQWIKGEKSGDVVTIKNIDDKWINFNEGGRLSKDLQNEFLQQLDSDIAGEFVKPQMSNNDPLNVSASPKNLQEVAISPIRVLFNKQKKNNKVKLLLEFPVNIPTKGVYEIMSTSFDKKEVNEQLESFILDQLSEDEILDCLHSSVQSLIESKYKGE
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