Scaffold Ga0209535_1008110

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1008110
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6148
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F046006	Metagenome	152	N
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100811012	F000720	GAGG	MTLQDDKIMRYEIPNRMMSTTFTLPIDNRKVIGIVNYTAGADGITPLALWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVHYFQKNVEEIISGNQPDKKQRMLSTDPYASQMKE
Ga0209535_100811013	F046006	GGAGG	VKEFLTPLGKYTNFVLLLLILHFCITVMVVNFRYIDKLNNTIDTMWHEIEQVKDTNIKLWQFIEEHGDDITGR
Ga0209535_100811014	F090883	GGAGG	MVTTALTMRRINNCRDMLTKTTCPRMRLMWKRNYEKLLKKYWEEQGERILNAAGQVH
Ga0209535_100811015	F004988	N/A	MENENLVRTICPRCDGNGYIRITPVIAGVFDRSSEIDCPMCEEEFTHMGMKVTAHNGYVLLPKEQTRTNIEGGRESKTKWSGETLPEVGK