Scaffold Ga0209535_1005955

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1005955
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7395
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043675	Metagenome / Metatranscriptome	156	Y
F062906	Metagenome	130	N
F077938	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100595510	F077938	AGGAG	MKLQEILERIQLIQSQLSEDNTAGALDDLNGLEDDLTVAVEKPQPMTPKEEDRNAGIKRNADGSVESEQTETATKRNDFGLPIIDARDQHLIRKNPKKMIG
Ga0209535_100595513	F043675	AGGAG	MTNKINMVINLSILALLIYLAISVKKIEDKVFPDPNVMIPLIKEMK
Ga0209535_10059555	F062906	GGAG	MADITLRLLYLMDNPHGGNSVKVGSSGLSKYQTRIGNYQQGNGPDYLVTWPICYIGEQSVINRLEERIKDSLEHDRLESRLGEWYDNHTAETIAPKIEAIIDGNRFKVKKVDLKFLPIAYEIGWKTQKKMVEHYQKSSILCDFLIG